Package: spatPomp
Type: Package
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Version: 1.1.0
Date: 2025-09-03
Authors@R: c(
  person("Kidus", "Asfaw", email = "kidusasfaw1990@gmail.com", role = c("aut")),
  person("Edward", "Ionides", email = "ionides@umich.edu",role = c("cre","aut")),
  person("Aaron A.", "King", email = "kingaa@umich.edu", role = c("aut")),
  person("Allister", "Ho", email = "allistho@umich.edu", role = c("ctb")),
  person("Joonha", "Park", email = "j.park@ku.edu", role = c("ctb")),
  person("Jesse", "Wheeler", email = "jeswheel@umich.edu", role = c("ctb")),
  person("Jifan", "Li", email = "jifanli@umich.edu", role = c("ctb")),
  person("Ning", "Ning", email = "patning@tamu.edu", role = c("ctb")),
  person("Haogao", "Gu", email = "hggu@connect.hku.hk", role = c("ctb")),
  person("Kunyang", "He", email = "hkunyang@umich.edu", role = c("ctb")),
  person("Gottfried", "Julian", email = "", role = c("ctb")))
URL: https://github.com/spatPomp-org/spatPomp
Description: Inference on panel data using spatiotemporal
        partially-observed Markov process (SpatPOMP) models. The
        'spatPomp' package extends 'pomp' to include algorithms taking
        advantage of the spatial structure in order to assist with
        handling high dimensional processes. See Asfaw et al. (2024)
        <doi:10.21105/joss.07008> for further description of the
        package.
SystemRequirements: For Windows users, Rtools (see
        https://cran.r-project.org/bin/windows/Rtools/).
License: GPL-3
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/spatPomp-org/spatPomp/issues/
Depends: pomp (>= 5.4), R(>= 4.1), methods
LinkingTo: pomp
Suggests: doParallel (>= 1.0.11), parallel, doRNG
Imports: foreach, dplyr, tidyr, stringr, abind, rlang, ggplot2
Collate: 'spatPomp_class.R' 'abf.R' 'abfir.R' 'arma_benchmark.R'
        'get_covariate_names.R' 'as_data_frame.R' 'bm.R' 'bm2.R'
        'bm2_kalman_logLik.R' 'bm_kalman_logLik.R' 'bpfilter.R'
        'city_data_UK.R' 'iter_filter.R' 'safecall.R' 'pstop.R'
        'undefined.R' 'spatPomp.R' 'ibpf.R' 'listie.R' 'conc.R'
        'concat.R' 'dunit_measure.R' 'enkf.R' 'eunit_measure.R' 'gbm.R'
        'girf.R' 'he10.R' 'he10coordinates.R' 'he10demography.R'
        'he10measles.R' 'he10mle.R' 'ienkf.R' 'igirf.R' 'init.R'
        'iubf.R' 'loglik.R' 'lorenz.R' 'measles.R' 'measles2.R'
        'measlesUK.R' 'munit_measure.R' 'package.R' 'param_formats.R'
        'plot.R' 'print.R' 'runit_measure.R' 'simulate.R'
        'spatPomp_Csnippet.R' 'spatPomp_workhorses.R' 'unit_names.R'
        'vec_dmeasure.R' 'vec_rmeasure.R' 'vunit_measure.R'
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev
Repository: https://spatpomp-org.r-universe.dev
Date/Publication: 2025-09-03 19:00:52 UTC
RemoteUrl: https://github.com/spatpomp-org/spatpomp
RemoteRef: HEAD
RemoteSha: 2e826242da8771eab0997ec0c3211d4d007c701e
NeedsCompilation: yes
Packaged: 2026-06-10 06:07:41 UTC; root
Author: Kidus Asfaw [aut],
  Edward Ionides [cre, aut],
  Aaron A. King [aut],
  Allister Ho [ctb],
  Joonha Park [ctb],
  Jesse Wheeler [ctb],
  Jifan Li [ctb],
  Ning Ning [ctb],
  Haogao Gu [ctb],
  Kunyang He [ctb],
  Gottfried Julian [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>