{
  "_id": "6ac75390de46216d5edce670",
  "Package": "spatPomp",
  "Type": "Package",
  "Title": "Inference for Spatiotemporal Partially Observed Markov Processes",
  "Version": "1.1.0",
  "Date": "2025-09-03",
  "Authors@R": "c(\nperson(\"Kidus\", \"Asfaw\", email = \"kidusasfaw1990@gmail.com\", role = c(\"aut\")),\nperson(\"Edward\", \"Ionides\", email = \"ionides@umich.edu\",role = c(\"cre\",\"aut\")),\nperson(\"Aaron A.\", \"King\", email = \"kingaa@umich.edu\", role = c(\"aut\")),\nperson(\"Allister\", \"Ho\", email = \"allistho@umich.edu\", role = c(\"ctb\")),\nperson(\"Joonha\", \"Park\", email = \"j.park@ku.edu\", role = c(\"ctb\")),\nperson(\"Jesse\", \"Wheeler\", email = \"jeswheel@umich.edu\", role = c(\"ctb\")),\nperson(\"Jifan\", \"Li\", email = \"jifanli@umich.edu\", role = c(\"ctb\")),\nperson(\"Ning\", \"Ning\", email = \"patning@tamu.edu\", role = c(\"ctb\")),\nperson(\"Haogao\", \"Gu\", email = \"hggu@connect.hku.hk\", role = c(\"ctb\")),\nperson(\"Kunyang\", \"He\", email = \"hkunyang@umich.edu\", role = c(\"ctb\")),\nperson(\"Gottfried\", \"Julian\", email = \"\", role = c(\"ctb\")))",
  "URL": "https://github.com/spatPomp-org/spatPomp",
  "Description": "Inference on panel data using spatiotemporal\npartially-observed Markov process (SpatPOMP) models. The\n'spatPomp' package extends 'pomp' to include algorithms taking\nadvantage of the spatial structure in order to assist with\nhandling high dimensional processes. See Asfaw et al. (2024)\n<doi:10.21105/joss.07008> for further description of the\npackage.",
  "SystemRequirements": "For Windows users, Rtools (see\nhttps://cran.r-project.org/bin/windows/Rtools/).",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "BugReports": "https://github.com/spatPomp-org/spatPomp/issues/",
  "Collate": "'spatPomp_class.R' 'abf.R' 'abfir.R' 'arma_benchmark.R'\n'get_covariate_names.R' 'as_data_frame.R' 'bm.R' 'bm2.R'\n'bm2_kalman_logLik.R' 'bm_kalman_logLik.R' 'bpfilter.R'\n'city_data_UK.R' 'iter_filter.R' 'safecall.R' 'pstop.R'\n'undefined.R' 'spatPomp.R' 'ibpf.R' 'listie.R' 'conc.R'\n'concat.R' 'dunit_measure.R' 'enkf.R' 'eunit_measure.R' 'gbm.R'\n'girf.R' 'he10.R' 'he10coordinates.R' 'he10demography.R'\n'he10measles.R' 'he10mle.R' 'ienkf.R' 'igirf.R' 'init.R'\n'iubf.R' 'loglik.R' 'lorenz.R' 'measles.R' 'measles2.R'\n'measlesUK.R' 'munit_measure.R' 'package.R' 'param_formats.R'\n'plot.R' 'print.R' 'runit_measure.R' 'simulate.R'\n'spatPomp_Csnippet.R' 'spatPomp_workhorses.R' 'unit_names.R'\n'vec_dmeasure.R' 'vec_rmeasure.R' 'vunit_measure.R'",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://spatpomp-org.r-universe.dev",
  "Date/Publication": "2025-09-03 19:00:52 UTC",
  "RemoteUrl": "https://github.com/spatpomp-org/spatpomp",
  "RemoteRef": "HEAD",
  "RemoteSha": "2e826242da8771eab0997ec0c3211d4d007c701e",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-08 08:16:43 UTC",
    "User": "root"
  },
  "Author": "Kidus Asfaw [aut],\nEdward Ionides [cre, aut],\nAaron A. King [aut],\nAllister Ho [ctb],\nJoonha Park [ctb],\nJesse Wheeler [ctb],\nJifan Li [ctb],\nNing Ning [ctb],\nHaogao Gu [ctb],\nKunyang He [ctb],\nGottfried Julian [ctb]",
  "Maintainer": "Edward Ionides <ionides@umich.edu>",
  "_user": "spatpomp-org",
  "_type": "src",
  "_file": "spatPomp_1.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/fe61b9281c50f38a82a8efca0761c3d65ed7f09f89e0e9df70a5bb239cb3af9b",
  "_filesize": 2995344,
  "_sha256": "fe61b9281c50f38a82a8efca0761c3d65ed7f09f89e0e9df70a5bb239cb3af9b",
  "_expires": "2027-01-16T08:25:49.000Z",
  "_created": "2026-10-08T08:16:43.000Z",
  "_published": "2026-10-08T08:25:52.544Z",
  "_buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113216744282,
      "time": 189,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11537401159"
    },
    {
      "job": 113216744171,
      "time": 181,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11536548733"
    },
    {
      "job": 113216744014,
      "time": 141,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536618203"
    },
    {
      "job": 113216744154,
      "time": 174,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11537037644"
    },
    {
      "job": 113216744099,
      "time": 254,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11537461568"
    },
    {
      "job": 113216744054,
      "time": 365,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11537068136"
    },
    {
      "job": 113216744140,
      "time": 210,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536613952"
    },
    {
      "job": 113216744031,
      "time": 401,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536908837"
    },
    {
      "job": 113215545092,
      "time": 196,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536259096"
    },
    {
      "job": 113216743904,
      "time": 122,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11536618132"
    },
    {
      "job": 113216744025,
      "time": 459,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11536988758"
    },
    {
      "job": 113216743943,
      "time": 229,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11537227422"
    },
    {
      "job": 113216743978,
      "time": 181,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11537287020"
    },
    {
      "job": 113216744037,
      "time": 495,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536729521"
    },
    {
      "job": 113216743959,
      "time": 197,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11536239554"
    }
  ],
  "_upstream": "https://github.com/spatpomp-org/spatpomp",
  "_commit": {
    "id": "2e826242da8771eab0997ec0c3211d4d007c701e",
    "author": "Ed Ionides <ionides@umich.edu>",
    "committer": "Ed Ionides <ionides@umich.edu>",
    "message": "add references to JOSS paper\n",
    "time": 1756926052
  },
  "_maintainer": {
    "name": "Edward Ionides",
    "email": "ionides@umich.edu",
    "login": "ionides",
    "description": "I am Professor of Statistics at University of Michigan. I study time series analysis with applications including ecology and epidemiology.",
    "uuid": 5505743
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "pomp",
      "version": ">= 5.4",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "pomp",
      "role": "LinkingTo"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "version": ">= 1.0.11",
      "role": "Suggests"
    },
    {
      "package": "parallel",
      "role": "Suggests"
    },
    {
      "package": "doRNG",
      "role": "Suggests"
    }
  ],
  "_owner": "spatpomp-org",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 5,
  "_contributors": [
    {
      "user": "kidusasfaw",
      "count": 320,
      "uuid": 875338
    },
    {
      "user": "ionides",
      "count": 168,
      "uuid": 5505743
    },
    {
      "user": "kingaa",
      "count": 28,
      "uuid": 1863307
    },
    {
      "user": "allistho",
      "count": 21,
      "uuid": 46427565
    },
    {
      "user": "joonhap",
      "count": 10,
      "uuid": 31295876
    },
    {
      "user": "jeswheel",
      "count": 2,
      "uuid": 70770493
    },
    {
      "user": "juliansgottfried",
      "count": 2,
      "uuid": 113379962
    },
    {
      "user": "koohoko",
      "count": 2,
      "uuid": 11829095
    },
    {
      "user": "kunyanghe21",
      "count": 1,
      "uuid": 105529573
    },
    {
      "user": "jifanli",
      "count": 1,
      "uuid": 101528038
    },
    {
      "user": "patning",
      "count": 1,
      "uuid": 72047692
    }
  ],
  "_userbio": {
    "uuid": 187579825,
    "type": "organization",
    "name": "SpatPomp Organization",
    "followers": 2
  },
  "_downloads": {
    "count": 395,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spatPomp"
  },
  "_devurl": "https://github.com/spatpomp-org/spatpomp",
  "_searchresults": 196,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/spatPomp.html"
  ],
  "_homeurl": "https://github.com/spatpomp-org/spatpomp",
  "_realowner": "spatpomp-org",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.21.0.0",
      "date": "2021-04-12"
    },
    {
      "version": "0.23.0.0",
      "date": "2021-07-09"
    },
    {
      "version": "0.25.0.0",
      "date": "2021-07-27"
    },
    {
      "version": "0.28.0.0",
      "date": "2021-09-05"
    },
    {
      "version": "0.29.0.0",
      "date": "2022-01-15"
    },
    {
      "version": "0.30.0.1",
      "date": "2022-09-06"
    },
    {
      "version": "0.30.2.0",
      "date": "2022-12-24"
    },
    {
      "version": "0.31.0.0",
      "date": "2023-01-16"
    },
    {
      "version": "0.32.0",
      "date": "2023-05-18"
    },
    {
      "version": "0.33.0",
      "date": "2023-08-09"
    },
    {
      "version": "0.34.0",
      "date": "2023-12-03"
    },
    {
      "version": "0.34.2",
      "date": "2024-02-18"
    },
    {
      "version": "0.35.0",
      "date": "2024-05-30"
    },
    {
      "version": "0.36.1",
      "date": "2024-08-20"
    },
    {
      "version": "1.0.0",
      "date": "2024-11-14"
    },
    {
      "version": "1.1.0",
      "date": "2025-09-03"
    }
  ],
  "_exports": [
    "abf",
    "abfir",
    "arma_benchmark",
    "bm",
    "bm_kalman_logLik",
    "bm2",
    "bm2_kalman_logLik",
    "bpfilter",
    "contract_params",
    "dunit_measure",
    "enkf",
    "eunit_measure",
    "expand_params",
    "gbm",
    "girf",
    "he10",
    "ibpf",
    "ienkf",
    "igirf",
    "iubf",
    "logLik",
    "lorenz",
    "mean_by_unit",
    "measles",
    "measles2",
    "munit_measure",
    "plot",
    "print",
    "runit_measure",
    "simulate",
    "spatPomp",
    "spatPomp_Csnippet",
    "unit_names",
    "vec_dmeasure",
    "vec_rmeasure",
    "vunit_measure"
  ],
  "_datasets": [
    {
      "name": "city_data_UK",
      "title": "City data in the United Kingdom",
      "object": "city_data_UK",
      "class": [
        "data.frame"
      ],
      "fields": [
        "city",
        "lon",
        "lat",
        "meanPop"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    },
    {
      "name": "he10coordinates",
      "title": "City data in the United Kingdom",
      "object": "he10coordinates",
      "class": [
        "data.frame"
      ],
      "fields": [
        "town",
        "long",
        "lat"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "he10demography",
      "title": "Demographic data for 20 towns in the United Kingdom",
      "object": "he10demography",
      "class": [
        "data.frame"
      ],
      "fields": [
        "town",
        "year",
        "pop",
        "births"
      ],
      "rows": 501,
      "table": true,
      "tojson": true
    },
    {
      "name": "he10measles",
      "title": "Measles in the United Kingdom",
      "object": "he10measles",
      "class": [
        "data.frame"
      ],
      "fields": [
        "town",
        "date",
        "cases"
      ],
      "rows": 21920,
      "table": true,
      "tojson": true
    },
    {
      "name": "he10mle",
      "title": "Measles in the United Kingdom: MLE from He et al (2010)",
      "object": "he10mle",
      "class": [
        "data.frame"
      ],
      "fields": [
        "town",
        "loglik",
        "loglik.sd",
        "mu",
        "delay",
        "sigma",
        "gamma",
        "rho",
        "R0",
        "amplitude",
        "alpha",
        "iota",
        "cohort",
        "psi",
        "S_0",
        "E_0",
        "I_0",
        "R_0",
        "sigmaSE"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "measlesUK",
      "title": "Measles in the United Kingdom",
      "object": "measlesUK",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "city",
        "cases",
        "pop",
        "births"
      ],
      "rows": 21880,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "spatPomp-package",
      "title": "Inference for SpatPOMPs (Spatiotemporal Partially Observed Markov Processes)",
      "topics": [
        "spatPomp-package"
      ]
    },
    {
      "page": "abf",
      "title": "Adapted Bagged Filter (ABF)",
      "concept": [
        "likelihood evaluation algorithms"
      ],
      "topics": [
        "abf",
        "abf,abfd_spatPomp-method",
        "abf,spatPomp-method",
        "abf-abfd_spatPomp",
        "abf-spatPomp"
      ]
    },
    {
      "page": "abfir",
      "title": "Adapted Bagged Filter with Intermediate Resampling (ABF-IR)",
      "concept": [
        "likelihood evaluation algorithms"
      ],
      "topics": [
        "abfir",
        "abfir,abfird_spatPomp-method",
        "abfir,spatPomp-method",
        "abfir-abfird_spatPomp",
        "abfir-spatPomp"
      ]
    },
    {
      "page": "arma_benchmark",
      "title": "Calculated log-ARMA log-likelihood benchmark for spatPomp models",
      "concept": [
        "utilities"
      ],
      "topics": [
        "arma_benchmark"
      ]
    },
    {
      "page": "as_data_frame",
      "title": "Coerce to data frame",
      "topics": [
        "as.data.frame",
        "as.data.frame.spatPomp",
        "coerce,spatPomp,data.frame-method"
      ]
    },
    {
      "page": "bm",
      "title": "Brownian motion spatPomp simulator",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "bm"
      ]
    },
    {
      "page": "bm_kalman_logLik",
      "title": "Exact log-likelihood for Brownian motion spatPomp generator",
      "topics": [
        "bm_kalman_logLik"
      ]
    },
    {
      "page": "bm2",
      "title": "Brownian motion spatPomp generator with shared or unit-specific parameters",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "bm2"
      ]
    },
    {
      "page": "bm2_kalman_logLik",
      "title": "Exact log-likelihood for Brownian motion spatPomp generator with shared or unit-specific parameters",
      "topics": [
        "bm2_kalman_logLik"
      ]
    },
    {
      "page": "bpfilter",
      "title": "Block particle filter (BPF)",
      "concept": [
        "likelihood evaluation algorithms"
      ],
      "topics": [
        "bpfilter",
        "bpfilter,ANY-method",
        "bpfilter,bpfilterd_spatPomp-method",
        "bpfilter,missing-method",
        "bpfilter,spatPomp-method",
        "bpfilter-ANY",
        "bpfilter-bpfilterd_spatPomp",
        "bpfilter-missing",
        "bpfilter-spatPomp"
      ]
    },
    {
      "page": "city_data_UK",
      "title": "City data in the United Kingdom",
      "concept": [
        "datasets"
      ],
      "topics": [
        "city_data_UK"
      ]
    },
    {
      "page": "concat",
      "title": "Concatenate",
      "topics": [
        "c",
        "c.SpatPomp",
        "concat"
      ]
    },
    {
      "page": "dunit_measure",
      "title": "dunit_measure 'dunit_measure' evaluates the unit measurement density of a unit's observation given the entire state",
      "topics": [
        "dunit_measure",
        "dunit_measure,spatPomp-method",
        "dunit_measure-spatPomp"
      ]
    },
    {
      "page": "enkf",
      "title": "Generalized Ensemble Kalman filter (EnKF)",
      "concept": [
        "likelihood evaluation algorithms"
      ],
      "topics": [
        "enkf",
        "enkf,ANY-method",
        "enkf,missing-method",
        "enkf,spatPomp-method",
        "enkf-spatPomp"
      ]
    },
    {
      "page": "eunit_measure",
      "title": "Expectation of the measurement model for one unit",
      "topics": [
        "eunit_measure",
        "eunit_measure,spatPomp-method",
        "eunit_measure-spatPomp"
      ]
    },
    {
      "page": "param_formats",
      "title": "Book-keeping functions for working with expanded parameters",
      "concept": [
        "utilities"
      ],
      "topics": [
        "contract_params",
        "contract_params,",
        "expand_params",
        "expand_params,",
        "mean_by_unit",
        "mean_by_unit,",
        "param_formats"
      ]
    },
    {
      "page": "gbm",
      "title": "Geometric Brownian motion spatPomp simulator",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "gbm"
      ]
    },
    {
      "page": "girf",
      "title": "Guided intermediate resampling filter (GIRF)",
      "concept": [
        "likelihood evaluation algorithms"
      ],
      "topics": [
        "girf",
        "girf,ANY-method",
        "girf,girfd_spatPomp-method",
        "girf,missing-method",
        "girf,spatPomp-method",
        "girf-ANY",
        "girf-girfd_spatPomp",
        "girf-missing",
        "girf-spatPomp"
      ]
    },
    {
      "page": "he10",
      "title": "Measles in UK: spatPomp generator with shared or unit-specific parameters",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "he10"
      ]
    },
    {
      "page": "he10coordinates",
      "title": "City data in the United Kingdom",
      "concept": [
        "datasets he10"
      ],
      "topics": [
        "he10coordinates"
      ]
    },
    {
      "page": "he10demography",
      "title": "Demographic data for 20 towns in the United Kingdom",
      "concept": [
        "datasets he10"
      ],
      "topics": [
        "he10demography"
      ]
    },
    {
      "page": "he10measles",
      "title": "Measles in the United Kingdom",
      "concept": [
        "datasets he10"
      ],
      "topics": [
        "he10measles"
      ]
    },
    {
      "page": "he10mle",
      "title": "Measles in the United Kingdom: MLE from He et al (2010)",
      "concept": [
        "datasets he10"
      ],
      "topics": [
        "he10mle"
      ]
    },
    {
      "page": "ibpf",
      "title": "Iterated block particle filter (IBPF)",
      "concept": [
        "likelihood maximization algorithms"
      ],
      "topics": [
        "ibpf",
        "ibpf,ANY-method",
        "ibpf,bpfilterd_spatPomp-method",
        "ibpf,ibpfd_spatPomp-method",
        "ibpf,missing-method",
        "ibpf,spatPomp-method",
        "ibpf-ANY",
        "ibpf-bpfd_spatPomp",
        "ibpf-ibpfd_spatPomp",
        "ibpf-missing",
        "ibpf-spatPomp"
      ]
    },
    {
      "page": "ienkf",
      "title": "Iterated ensemble Kalman filter (IEnKF)",
      "concept": [
        "likelihood maximization algorithms"
      ],
      "topics": [
        "ienkf",
        "ienkf,spatPomp-method",
        "ienkf-spatPomp"
      ]
    },
    {
      "page": "igirf",
      "title": "Iterated guided intermediate resampling filter (IGIRF)",
      "concept": [
        "likelihood maximization algorithms"
      ],
      "topics": [
        "igirf",
        "igirf,ANY-method",
        "igirf,igirfd_spatPomp-method",
        "igirf,missing-method",
        "igirf,spatPomp-method",
        "igirf-ANY",
        "igirf-igirfd_spatPomp",
        "igirf-missing",
        "igirf-spatPomp"
      ]
    },
    {
      "page": "iubf",
      "title": "Iterated Unadapted Bagged Filter (IUBF)",
      "concept": [
        "likelihood maximization algorithms"
      ],
      "topics": [
        "iubf",
        "iubf,spatPomp-method",
        "iubf-spatPomp"
      ]
    },
    {
      "page": "loglik",
      "title": "Log likelihood extractor",
      "topics": [
        "logLik",
        "logLik,abfd_spatPomp-method",
        "logLik,abfird_spatPomp-method",
        "logLik,bpfilterd_spatPomp-method",
        "logLik,girfd_spatPomp-method",
        "logLik,igirfd_spatPomp-method",
        "logLik,iubfd_spatPomp-method",
        "logLik-abfd_spatPomp",
        "logLik-abfird_spatPomp",
        "logLik-bpfilterd_spatPomp",
        "logLik-girfd_spatPomp",
        "logLik-igirfd_spatPomp",
        "logLik-iubfd_spatPomp"
      ]
    },
    {
      "page": "lorenz",
      "title": "Lorenz '96 spatPomp constructor",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "lorenz",
        "lorenz96"
      ]
    },
    {
      "page": "measles",
      "title": "Measles in UK spatPomp generator",
      "concept": [
        "spatPomp model generators"
      ],
      "topics": [
        "measles"
      ]
    },
    {
      "page": "measles2",
      "title": "Measles in UK: spatPomp generator with shared or unit-specific parameters",
      "topics": [
        "measles2"
      ]
    },
    {
      "page": "measlesUK",
      "title": "Measles in the United Kingdom",
      "concept": [
        "datasets"
      ],
      "topics": [
        "measlesUK"
      ]
    },
    {
      "page": "munit_measure",
      "title": "Matching moments for the unit measurement model",
      "topics": [
        "munit_measure",
        "munit_measure,spatPomp-method",
        "munit_measure-spatPomp"
      ]
    },
    {
      "page": "plot",
      "title": "Plot methods for 'spatPomp' objects",
      "topics": [
        "plot",
        "plot,igirfd_spatPomp-method",
        "plot,spatPomp-method",
        "plot-igirfd_spatPomp",
        "plot-spatPomp"
      ]
    },
    {
      "page": "print",
      "title": "Print methods",
      "topics": [
        "print",
        "print,spatPomp-method",
        "print-spatPomp"
      ]
    },
    {
      "page": "runit_measure",
      "title": "Random draw from the measurement model for one unit",
      "topics": [
        "runit_measure",
        "runit_measure,spatPomp-method",
        "runit_measure-spatPomp"
      ]
    },
    {
      "page": "simulate",
      "title": "Simulation of a spatiotemporal partially-observed Markov process",
      "topics": [
        "simulate",
        "simulate,spatPomp-method",
        "simulate-spatPomp"
      ]
    },
    {
      "page": "spatPomp",
      "title": "Constructor of the spatPomp object",
      "topics": [
        "spatPomp"
      ]
    },
    {
      "page": "spatPomp_Csnippet",
      "title": "C snippets",
      "topics": [
        "spatPomp_Csnippet",
        "spatPomp_Csnippet,character-method",
        "spatPomp_Csnippet-character"
      ]
    },
    {
      "page": "spatPomp-class",
      "title": "An S4 class to represent a spatiotemporal POMP model and data.",
      "topics": [
        "spatPomp-class"
      ]
    },
    {
      "page": "unit_names",
      "title": "Unit names of a spatiotemporal model",
      "topics": [
        "unit_names",
        "unit_names,spatPomp-method",
        "unit_names-spatPomp"
      ]
    },
    {
      "page": "vec_dmeasure",
      "title": "Vector of unit measurement densities for each unit",
      "topics": [
        "vec_dmeasure",
        "vec_dmeasure,spatPomp-method",
        "vec_dmeasure-spatPomp"
      ]
    },
    {
      "page": "vec_rmeasure",
      "title": "Vector simulating measurements for each unit using 'runit_measure'",
      "topics": [
        "vec_rmeasure",
        "vec_rmeasure,spatPomp-method",
        "vec_rmeasure-spatPomp"
      ]
    },
    {
      "page": "vunit_measure",
      "title": "Conditional variance of the measurement on a single unit",
      "topics": [
        "vunit_measure",
        "vunit_measure,spatPomp-method",
        "vunit_measure-spatPomp"
      ]
    }
  ],
  "_readme": "https://github.com/spatpomp-org/spatpomp/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "cli",
    "coda",
    "codetools",
    "cpp11",
    "data.table",
    "deSolve",
    "digest",
    "dplyr",
    "farver",
    "foreach",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "iterators",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "pomp",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "ibpf.Rnw",
      "filename": "ibpf.pdf",
      "title": "ibpf",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2024-08-06 15:40:31",
      "modified": "2024-08-06 15:40:31",
      "commits": 1
    },
    {
      "source": "tutorial.Rnw",
      "filename": "tutorial.pdf",
      "title": "tutorial",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2024-08-06 15:40:31",
      "modified": "2024-08-06 15:40:31",
      "commits": 1
    }
  ],
  "_score": 6.991226075692495,
  "_indexed": true,
  "_nocasepkg": "spatpomp",
  "_universes": [
    "spatpomp-org",
    "ionides"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-10-08T08:19:16.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/b2c4679e15540bb300643c75eeac95895ba9ad2b86f004f2cef851711939b3c5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-10-08T08:18:45.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/0450cf306795fe5b2c7e5dbb8cb7f62d182e52647f1189e5af53ab365675524c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-10-08T08:18:33.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/f30d556d213fd4b8a476f076ebbf94a43fa4f965f03e035931caaaf208ccb287",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-10-08T08:18:45.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/6a9e95bfb45ddaa71b320b3398dd8f51c99ef7dc738546b687a5af191935a235",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-10-08T08:22:17.000Z",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/483775bf15bc36b5ae381461329a8a7051114fbf44b41eca968e1db6b227ba9c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-10-08T08:21:08.000Z",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/16f558a8487cebd0ea8032feb98a7efa7d83f412430712c7b835d3c67ef20273",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-10-08T08:22:42.000Z",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/03d388ca9a4560306a7d884c2fe20204bf1cc395b24cc05c0cff5e92321e3a64",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-10-08T08:20:56.000Z",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/0ed133a71d0cf7e55d4bc0662d595598f424e01f88f26865d1431a168887007e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-10-08T08:19:08.000Z",
      "arch": "emscripten",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/b28aeab23b70bc78eb38687ebb9ea268ff998b35ac832181ca1921e1a7cc40a8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-10-08T08:21:32.000Z",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/6436701d8f02852d4c60d81ce13ecbc8a0153317f0b24f1342a52bd661713186",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-10-08T08:18:00.000Z",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/cb2af278cd1755aabb37d339044917b71ead15151d9bf56fa4cd5ab8a9a37368",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-10-08T08:17:55.000Z",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/74aea1999e5ca2947f9978a409a8367fa468730daaeaadc137cf50e29c6becd8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-10-08T08:22:13.000Z",
      "arch": "aarch64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/3ae5394e6d673045d04e7c0bc89d2caac4be4a1a8a6d78eee5b1f79ba919306e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-10-08T08:18:00.000Z",
      "arch": "x86_64",
      "commit": "2e826242da8771eab0997ec0c3211d4d007c701e",
      "fileid": "https://r2.ropensci.org/383f2902e8fceaccfa97b776b2fc8538771d0039fa86e1da91c75b8e171aa41b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/spatpomp-org/actions/runs/37748432404"
    }
  ]
}